Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRP | rs16930505 | chr10:75052076 | T/C | 4.52E-12 | 214 | 16.53 | 11.77 | 5.6 | KM Plot |
| KIRP | rs16930909 | chr10:75561582 | T/C | 0 | 212 | 16.5 | 14.95 | 2.47 | KM Plot |
| KIRP | rs16934329 | chr11:17535273 | A/G | 3.23E-6 | 214 | 9 | 19.27 | 14.97 | KM Plot |
| KIRP | rs16936424 | chr11:42223006 | C/T | 0.000217 | 214 | 15.33 | 15.48 | 17.13 | KM Plot |
| KIRP | rs16941731 | chr17:45317022 | C/T | 1.36E-11 | 214 | 0.43 | 26.47 | 14.53 | KM Plot |
| KIRP | rs16941733 | chr17:45318289 | T/C | 1.66E-11 | 213 | 14.53 | 24.9 | 0.43 | KM Plot |
| KIRP | rs16943940 | chr17:10838925 | A/G | 4.68E-5 | 214 | 3.6 | 10.3 | 16.98 | KM Plot |
| KIRP | rs16945357 | chr16:47484839 | C/T | 2.19E-7 | 214 | 17.2 | 12.63 | 13.63 | KM Plot |
| KIRP | rs16945387 | chr16:47544697 | A/G | 2.12E-6 | 214 | 17.2 | 12.32 | 14.87 | KM Plot |
| KIRP | rs16945408 | chr16:47595005 | A/G | 7.93E-8 | 214 | 17.6 | 12.32 | 12.85 | KM Plot |
| KIRP | rs16945413 | chr16:47600476 | T/C | 8.97E-8 | 213 | 17.2 | 12.32 | 12.85 | KM Plot |
| KIRP | rs16945438 | chr16:47653121 | A/G | 7.92E-8 | 214 | 14.87 | 12.63 | 17.17 | KM Plot |
| KIRP | rs16964766 | chr17:27393310 | G/A | 0.000264 | 205 | 15.2 | 17.73 | 9 | KM Plot |
| KIRP | rs16974692 | chr18:10516857 | C/G | 1.71E-8 | 214 | 9 | 14.87 | 16.45 | KM Plot |
| KIRP | rs16975857 | chr18:11176926 | A/G | 9.44E-12 | 214 | 5.57 | 11.77 | 18 | KM Plot |